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Tingting Yang, Kylie E Beach, Chendi Zhu, Mingyu Gan, Wenli Wang, Hongjuan Zhou, Lijun Peng, Shanshan Wang, Long Cai, Weimin Li, Jordan B Davis, Nico Cicchetti, E Susan Slechta, Adam Barker, Salika M Shakir, Allison F Carey, Qingyun Liu, Genomic Analysis of Global Mycobacterium abscessus Isolates Reveals Ongoing Evolution of Drug Resistance–Associated Genes, The Journal of Infectious Diseases, 2024;, jiae580, https://doi.org/10.1093/infdis/jiae580

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Carey AF, Wang X, Cicchetti N, Spaulding CN, Liu Q, Hopkins F, Brown J, Sixsmith J, Sutiwisesak R, Behar SM, Ioerger TR, Fortune SM. Multiplexed Strain Phenotyping Defines Consequences of Genetic Diversity in Mycobacterium tuberculosis for Infection and Vaccination Outcomes. mSystems. 2022 Jun 28;7(3):e0011022. doi: 10.1128/msystems.00110-22. Epub 2022 Apr 18. PubMed PMID: 35430871; PubMed Central PMCID: PMC9239107.

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Cadena AM, Hopkins FF, Maiello P, Carey AF, Wong EA, Martin CJ, Gideon HP, DiFazio RM, Andersen P, Lin PL, Fortune SM, Flynn JL. Concurrent infection with Mycobacterium tuberculosis confers robust protection against secondary infection in macaques. PLoS Pathog. 2018 Oct;14(10):e1007305. doi: 10.1371/journal.ppat.1007305. eCollection 2018 Oct. PubMed PMID: 30312351; PubMed Central PMCID: PMC6200282.

Carey AF, Rock JM, Krieger IV, Chase MR, Fernandez-Suarez M, Gagneux S, Sacchettini JC, Ioerger TR, Fortune SM. TnSeq of Mycobacterium tuberculosis clinical isolates reveals strain-specific antibiotic liabilities. PLoS Pathog. 2018 Mar;14(3):e1006939. doi: 10.1371/journal.ppat.1006939. eCollection 2018 Mar. PubMed PMID: 29505613; PubMed Central PMCID: PMC5854444.